Jatropha Genome Database

JcCA0311281.10 (JcS_100720.90)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0311281
Scaffold:
JcS_100720 JcCB0902031(-) =JcCA0268211(-) =JcCA0152031(-) =JcCB0028271(-) =JcCA0311281(-) =JcCB0466631(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R8Q0_RICCO 1129 79.0 88.0 (tr|B9R8Q0) Brca1 interacting protein helicase 1 brip1, putative OS=Ricinus communis GN=RCOM_1601590 PE=4 SV=1
Arabidopsis_pep AT1G20720.1 872 63.5 77.8 | Symbols: | ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding | chr1:7185658-7192794 REVERSE
soybean_pep Glyma14g39780.1 899 70.2 82.1  
Medicago_pep IMGA|AC234703_2.1 317 33.9 48.7 Xeroderma pigmentosum group D protein; ATP-dependent helicase, DEAH-box; ; AC234703.1 26378-15197 E EGN_Mt090430 20090702
grape_pep GSVIVT01013389001 862 62.4 73.1  
castor_bean_cds 30170.m014390 1524 85.8 85.8 brca1 interacting protein helicase 1 brip1, putative
castor_bean_pep 30170.m014390 1129 79.0 88.0 brca1 interacting protein helicase 1 brip1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0311281.10 length: 702 aa.
IPR006554 Helicase-like, DEXD box c2 type
method AccNumber shortName E-value location
Molecular Function GO:0004003 ATP-dependent DNA helicase activity    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMSmart SM00488 no description 0.0028 1-183
IPR006555 Helicase, ATP-dependent, c2 type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process    
Molecular Function GO:0008026 ATP-dependent helicase activity    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMSmart SM00491 no description 1.8e-40 397-578
IPR014013 Helicase, superfamily 1/2, ATP-binding domain, DinG/Rad3-type
ProfileScan PS51193 HELICASE_ATP_BIND_2 13.158 1-186
no_ID  
HMMPanther PTHR11472 DNA 6.3e-244 1-621
HMMPanther PTHR11472:SF6 BRCA1 6.3e-244 1-621
HMMPfam PF06733 DEAD_2 9e-28 2-139