Jatropha Genome Database

JcCA0310831.20 (JcS_102138.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0310831
Scaffold:
JcS_102138 JcCB0264811(-) =JcCB0075571(-) =JcCB0139441(+) =JcCA0310831(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RQ77_RICCO 891 77.6 83.7 (tr|B9RQ77) RNA m5u methyltransferase, putative OS=Ricinus communis GN=RCOM_1486130 PE=4 SV=1
Arabidopsis_pep AT3G21300.1 805 77.4 88.7 | Symbols: | RNA methyltransferase family protein | chr3:7493654-7496257 REVERSE
soybean_pep Glyma13g42890.1 566 76.3 85.3  
Medicago_pep IMGA|Medtr2g121790.1 793 74.8 85.5 23S rRNA methyltransferase/RumA; Methyltransferase small chr02_pseudomolecule_IMGAG_V3 28983923-28977319 E EGN_Mt090430 20090702
grape_pep GSVIVT01016904001 827 81.5 89.8  
castor_bean_cds 30146.m003439 1463 87.7 87.7 RNA m5u methyltransferase, putative
castor_bean_pep 30146.m003439 891 77.6 83.7 RNA m5u methyltransferase, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0310831.20 length: 569 aa.
IPR001566 23S rRNA methyltransferase/RumA
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0006396 RNA processing    
Molecular Function GO:0008173 RNA methyltransferase activity    
HMMTigr TIGR00479 rumA: 5.7e-75 96-561
IPR002792 Deoxyribonuclease/rho motif-related TRAM
ProfileScan PS50926 TRAM 9.993 82-142
IPR010280 (Uracil-5)-methyltransferase
Biological Process GO:0006396 RNA processing    
Molecular Function GO:0008173 RNA methyltransferase activity    
HMMPfam PF05958 tRNA_U5-meth_tr 3.5e-16 378-567
PatternScan PS01231 TRMA_2 NA 551-561
IPR016027 Nucleic acid-binding, OB-fold-like
superfamily SSF50249 Nucleic 2.1e-08 87-148
no_ID  
Gene3D G3DSA:3.40.50.150 no description 8.6e-09 358-492
HMMPanther PTHR11061 RNA 3.9e-147 94-567
HMMPanther PTHR11061:SF2 RNA 3.9e-147 94-567
Seg seg seg NA 37-56
344-361
superfamily SSF53335 S-adenosyl-L-methionine-dependent 8.4e-63 149-567