Jatropha Genome Database

JcCA0310021.20 (JcS_100080.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0310021
Scaffold:
JcS_100080 JcCB0397941(+) =JcCA0131871(-) =JcCD0145641(-) =JcCA0071791(-) =JcCA0310021(-) =JcCB0126391(+) =JcCB0072271(-) =JcCB0455001(-) =JcCB0575231(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RN31_RICCO 192 53.5 65.2 (tr|B9RN31) Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1343120 PE=4 SV=1
Arabidopsis_pep AT2G46970.1 119 46.5 56.1 | Symbols: PIL1 | PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1); transcription factor | chr2:19295617-19297678 REVERSE
soybean_pep Glyma10g27910.1 144 43.7 58.8  
Medicago_pep IMGA|Medtr1g103000.1 133 52.4 66.7 Helix-loop-helix DNA-binding chr01_pseudomolecule_IMGAG_V3 21335912-21331478 E EGN_Mt090430 20090702
grape_pep GSVIVT01031338001 133 51.7 63.1  
castor_bean_cds 30076.m004542 232 88.2 88.2 hypothetical protein
castor_bean_pep 30076.m004542 192 53.5 65.2 hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 KJC_s16011 167 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0310021.20 length: 237 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF00010 HLH 6.4e-13 63-109
HMMSmart SM00353 no description 3.3e-15 65-114
ProfileScan PS50888 HLH 15.049 55-109
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:4.10.280.10 no description 3.9e-08 55-135
superfamily SSF47459 HLH, 9.3e-17 57-141
no_ID  
Coil coil coiled-coil NA 23-44
HMMPanther PTHR10985 BASIC 6.8e-08 51-107
HMMPanther PTHR10985:SF7 TRANSCRIPTION 6.8e-08 51-107