Jatropha Genome Database

JcCA0309861.20 (JcS_101792.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0309861
Scaffold:
JcS_101792 JcCA0310221(-) =JcCA0309861(+) =JcCB0372261(+) =JcCA0154771(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9REX9_RICCO 861 80.7 87.3 (tr|B9REX9) Shikimate dehydrogenase, putative OS=Ricinus communis GN=RCOM_1429640 PE=3 SV=1
Arabidopsis_pep AT3G06350.1 493 48.0 66.9 | Symbols: EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase | chr3:1924536-1927701 REVERSE
soybean_pep Glyma19g42830.1 598 59.8 71.3  
Medicago_pep IMGA|Medtr4g125380.1 436 44.4 62.9 Dehydroquinase class I; Shikimate/quinate 5-dehydrogenase; chr04_pseudomolecule_IMGAG_V3 29552562-29559339 E EGN_Mt090430 20090702
grape_pep GSVIVT01021977001 768 71.1 82.3  
castor_bean_cds 30128.m008683 1501 87.3 87.3 shikimate dehydrogenase, putative
castor_bean_pep 30128.m008683 861 80.7 87.3 shikimate dehydrogenase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c01260 1725 99.8 99.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0309861.20 length: 519 aa.
IPR001381 Dehydroquinase class I
method AccNumber shortName E-value location
Molecular Function GO:0003855 3-dehydroquinate dehydratase activity    
HAMAP MF_00214 AROD_MF_00214 18.954 13-233
HMMPfam PF01487 DHquinase_I 1.3e-57 14-230
HMMTigr TIGR01093 aroD: 2e-43 12-229
IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
Molecular Function GO:0004764 shikimate 5-dehydrogenase activity    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0055114 oxidation reduction    
HMMPfam PF01488 Shikimate_DH 1.1e-06 364-441
IPR013708 Shikimate dehydrogenase substrate binding, N-terminal
HMMPfam PF08501 Shikimate_dh_N 6.6e-22 243-323
IPR013785 Aldolase-type TIM barrel
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolic process    
Gene3D G3DSA:3.20.20.70 no description 1.4e-48 1-230
IPR016040 NAD(P)-binding domain
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0005488 binding    
Biological Process GO:0008152 metabolic process    
superfamily SSF51735 NAD(P)-binding 1.5e-31 338-519
no_ID  
Gene3D G3DSA:3.40.192.10 no description 1.2e-31 232-379
HAMAP MF_00222 AROE_MF_00222 28.071 239-518
HMMPanther PTHR21089 SHIKIMATE 9.9e-30 431-518
Seg seg seg NA 371-387
superfamily SSF51569 Aldolase 8.5e-51 1-231
superfamily SSF53223 Aminoacid 1.3e-32 228-337