Jatropha Genome Database

JcCA0309351.30 (JcS_100027.10)   /short
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0309351
Scaffold:
JcS_100027 JcCA0004722(+) =JcCA0309351(-) =JcCA0192231(+) =JcCA0095121(+) =JcCB0277631(+) =JcCB0286801(+) =JcCB0033401(-) =JcCA0245291(+) =JcCA0304521(+) =JcCA0144471(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SCV0_RICCO 78.6 100.0 100.0 (tr|B9SCV0) 40S ribosomal protein S25, putative OS=Ricinus communis GN=RCOM_1281730 PE=4 SV=1
Arabidopsis_pep AT2G21580.2 69.7 84.2 97.4 | Symbols: | 40S ribosomal protein S25 (RPS25B) | chr2:9236629-9237510 FORWARD
soybean_pep Glyma06g01310.3 73.9 89.5 100.0  
Medicago_pep IMGA|Medtr2g107670.1 71.2 86.8 97.4 S25 ribosomal protein chr02_pseudomolecule_IMGAG_V3 25380400-25379636 E EGN_Mt090430 20090702
grape_pep GSVIVT01000974001 75.9 97.3 100.0  
castor_bean_cds 30055.m001573 161 92.9 92.9 40S ribosomal protein S25, putative
castor_bean_pep 30055.m001573 78.6 100.0 100.0 40S ribosomal protein S25, putative
JAT_13201ests gi|268522184|gb|FM893024.1|FM893024 192 96.5 96.5 FM893024 Jatropha curcas embryo 56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003745, mRNA sequence
KJC_r1 KJC_c01317 184 95.6 95.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0309351.30 length: 43 aa.
IPR004977 Ribosomal protein S25
method AccNumber shortName E-value location
BlastProDom PD012268 RS25_LYCES_P46301; 9e-13 6-42
HMMPanther PTHR12850 FAMILY 1e-17 6-43
HMMPfam PF03297 Ribosomal_S25 8.5e-12 6-41
no_ID  
HMMPanther PTHR12850:SF4 SUBFAMILY 1e-17 6-43