Jatropha Genome Database

JcCA0309311.20 (JcS_101135.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0309311
Scaffold:
JcS_101135 JcCB0262311(-) =JcCB0464111(+) =JcCB0199171(-) =JcCA0309311(+) =JcCA0122071(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T3M7_RICCO 149 63.1 73.9 (tr|B9T3M7) DNA binding protein, putative OS=Ricinus communis GN=RCOM_1165760 PE=4 SV=1
Arabidopsis_pep AT3G46580.1 76.6 41.3 53.2 | Symbols: MBD05, MBD5, ATMBD5 | MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5); DNA binding / methyl-CpG binding | chr3:17148397-17149328 FORWARD
soybean_pep --No_Hits--        
Medicago_pep --No_Hits--        
grape_pep GSVIVT01024954001 74.3 37.5 56.2  
castor_bean_cds 29977.m000249 105 79.8 79.8 DNA binding protein, putative
castor_bean_pep 29977.m000249 149 63.1 73.9 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c05366 268 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0309311.20 length: 115 aa.
IPR001739 Methyl-CpG DNA binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF01429 MBD 6.8e-06 3-29
ProfileScan PS50982 MBD 10.931 1-48
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 8e-07 1-49
no_ID  
Seg seg seg NA 53-62