Jatropha Genome Database

JcCA0308171.30 (JcS_101786.80)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0308171
Scaffold:
JcS_101786 JcCA0308421(+) =JcCA0314481(-) =JcCA0137431(-) =JcCA0308171(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R722_RICCO 139 53.5 62.5 (tr|B9R722) Transcription initiation factor, putative OS=Ricinus communis GN=RCOM_1588000 PE=4 SV=1
Arabidopsis_pep AT5G43130.1 78.2 41.2 50.7 | Symbols: TAF4, TAF4B | TAF4 (TBP-ASSOCIATED FACTOR 4); transcription initiation factor | chr5:17315608-17321144 REVERSE
soybean_pep Glyma14g09690.1 123 51.4 60.3  
Medicago_pep --No_Hits--        
grape_pep GSVIVT01009365001 123 49.3 58.0  
castor_bean_cds 30170.m013758 163 83.5 83.5 transcription initiation factor, putative
castor_bean_pep 30170.m013758 139 53.5 62.5 transcription initiation factor, putative
JAT_13201ests gi|268524309|gb|FM894989.1|FM894989 339 100.0 100.0 FM894989 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001312, mRNA sequence
KJC_r1 KJC_c11917 236 82.2 82.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0308171.30 length: 191 aa.
IPR007900 Transcription initiation factor TFIID component TAF4
method AccNumber shortName E-value location
Cellular Component GO:0005669 transcription factor TFIID complex    
Biological Process GO:0006352 transcription initiation    
Molecular Function GO:0016986 transcription initiation factor activity    
HMMPfam PF05236 TAF4 2.1e-22 14-180
no_ID  
HMMPanther PTHR15138 FAMILY 9e-41 36-178
HMMPanther PTHR15138:SF1 gb 9e-41 36-178
Seg seg seg NA 31-44
60-78
130-140