Jatropha Genome Database

JcCA0307481.10 (JcS_201342.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0307481
Scaffold:
JcS_201342 JcCA0307481(+) =JcCB0691451(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9I6K2_POPTR 240 43.6 63.5 (tr|B9I6K2) F-box family protein OS=Populus trichocarpa GN=POPTRDRAFT_571849 PE=4 SV=1
Arabidopsis_pep AT3G18150.1 104 30.0 52.5 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G02910.1). | chr3:6217929-6219500 FORWARD
soybean_pep Glyma08g40890.1 73.9 28.6 47.9  
Medicago_pep IMGA|Medtr1g025900.1 87.0 29.3 45.1 Cyclin-like F-box chr01_pseudomolecule_IMGAG_V3 6502737-6499920 E EGN_Mt090430 20090702
grape_pep GSVIVT01003198001 101 28.5 51.5  
castor_bean_cds --No_Hits--        
castor_bean_pep 27533.m000078 94.7 27.0 43.8 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0307481.10 length: 345 aa.
IPR001810 Cyclin-like F-box
method AccNumber shortName E-value location
HMMPfam PF00646 F-box 6e-09 17-53
HMMSmart SM00256 no description 1.3e-05 20-61
ProfileScan PS50181 FBOX 11.432 14-50
no_ID  
Gene3D G3DSA:3.80.10.10 no description 1.6e-09 16-294
HMMPanther PTHR23244 KELCH 6.5e-05 14-50
HMMPanther PTHR23244:SF7 F-BOX 6.5e-05 14-50
Seg seg seg NA 310-322
superfamily SSF52047 RNI-like 1.1e-06 129-268
superfamily SSF81383 F-box 6e-10 12-57