Jatropha Genome Database

JcCA0306761.10 (JcS_100058.30)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0306761
Scaffold:
JcS_100058 JcCA0233921(+) =JcCB0317901(+) =JcCA0306761(+) =JcCB0645591(+) =JcCA0134361(+) =JcCB0102851(+) =JcCB0029261(-) =JcPR04JCLS5(-) =JcCD0076378(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R871_RICCO 647 83.6 87.4 (tr|B9R871) 5'->3' exoribonuclease, putative OS=Ricinus communis GN=RCOM_1597380 PE=4 SV=1
Arabidopsis_pep AT1G75660.1 574 75.9 82.9 | Symbols: XRN3 | XRN3; 5'-3' exoribonuclease | chr1:28408289-28414825 FORWARD
soybean_pep Glyma17g37650.1 632 84.0 87.5  
Medicago_pep IMGA|Medtr7g140440.1 472 62.2 75.8 Zinc finger, CCHC-type; Putative 5-3 exonuclease chr07_pseudomolecule_IMGAG_V3 33823109-33833019 E EGN_Mt090430 20090702
grape_pep GSVIVT01009879001 648 83.8 88.1  
castor_bean_cds 30170.m014167 1088 87.9 87.9 5'->3' exoribonuclease, putative
castor_bean_pep 30170.m014167 647 83.6 87.4 5'->3' exoribonuclease, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c02382 1433 99.1 99.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0306761.10 length: 374 aa.
IPR001878 Zinc finger, CCHC-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50158 ZF_CCHC 9.142 200-214
IPR004859 Putative 5-3 exonuclease
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004527 exonuclease activity    
Cellular Component GO:0005622 intracellular    
HMMPfam PF03159 XRN_N 9.7e-86 6-191
no_ID  
Coil coil coiled-coil NA 59-80
HMMPanther PTHR12341 5'->3' 6.4e-168 5-365
Seg seg seg NA 52-79