Jatropha Genome Database

JcCA0306451.20 (JcS_100388.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0306451
Scaffold:
JcS_100388 JcCA0101011(+) =JcCB0371021(-) =JcCB0104191(+) =JcCA0143421(-) =JcCA0306451(+) =JcCB0424111(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HIQ4_POPTR 160 91.2 96.2 (tr|B9HIQ4) DNA-directed RNA polymerase subunit OS=Populus trichocarpa GN=POPTRDRAFT_820572 PE=3 SV=1
Arabidopsis_pep AT3G16980.1 154 86.2 93.8 | Symbols: NRPB9A, NRPD9A, NRPE9A | NRPB9A; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding | chr3:5794526-5795699 FORWARD
soybean_pep Glyma09g04220.1 151 86.2 90.0  
Medicago_pep IMGA|Medtr2g038620.1 154 90.0 92.5 DNA-directed RNA polymerase, subunit C11/M/9 chr02_pseudomolecule_IMGAG_V3 10822895-10820021 F EGN_Mt090430 20090702
grape_pep GSVIVT01035016001 150 85.0 91.2  
castor_bean_cds 29889.m003276 194 89.4 89.4 DNA-directed RNA polymerase II, putative
castor_bean_pep 29889.m003276 157 90.0 93.8 DNA-directed RNA polymerase II, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0306451.20 length: 115 aa.
IPR001222 Zinc finger, TFIIS-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF01096 TFIIS_C 2e-11 76-114
HMMSmart SM00440 no description 4.7e-09 75-115
ProfileScan PS51133 ZF_TFIIS_2 12.791 73-114
no_ID  
Gene3D G3DSA:2.20.25.10 no description 7.6e-20 48-113
HMMPanther PTHR11239 DNA-DIRECTED 3.9e-40 36-115
HMMPanther PTHR11239:SF1 DNA-DIRECTED 3.9e-40 36-115
Seg seg seg NA 5-11
superfamily SSF57783 Zinc 3.3e-16 51-115