Jatropha Genome Database

JcCA0306451.10 (JcS_100388.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0306451
Scaffold:
JcS_100388 JcCA0101011(+) =JcCB0371021(-) =JcCB0104191(+) =JcCA0143421(-) =JcCA0306451(+) =JcCB0424111(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A2Q283_MEDTR 905 48.6 64.4 (tr|A2Q283) Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 OS=Medicago truncatula GN=MtrDRAFT_AC149491g27v2 PE=4 SV=1
Arabidopsis_pep AT5G49430.1 849 47.2 62.4 | Symbols: | transducin family protein / WD-40 repeat family protein | chr5:20037338-20045454 REVERSE
soybean_pep Glyma09g04210.1 955 49.3 64.6  
Medicago_pep IMGA|Medtr2g038600.1 906 48.6 64.4 WD40-like chr02_pseudomolecule_IMGAG_V3 10806728-10817794 E EGN_Mt090430 20090702
grape_pep GSVIVT01035014001 574 55.9 67.7  
castor_bean_cds 29889.m003277 1035 85.5 85.5 WD-repeat protein, putative
castor_bean_pep 29889.m003277 713 61.3 73.8 WD-repeat protein, putative
JAT_13201ests gi|268522642|gb|FM896683.1|FM896683 553 100.0 100.0 FM896683 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003959, mRNA sequence
KJC_r1 KJC_c07541 862 99.1 99.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0306451.10 length: 1175 aa.
IPR001487 Bromodomain
method AccNumber shortName E-value location
Gene3D G3DSA:1.20.920.10 no description 0.0006 1115-1175
HMMPfam PF00439 Bromodomain 2.6e-06 1103-1151
superfamily SSF47370 Bromodomain 4.5e-09 1073-1175
no_ID  
HMMPanther PTHR16266 WD 7.1e-12 885-1056
HMMPanther PTHR16266:SF2 WD 7.1e-12 885-1056
Seg seg seg NA 11-22
364-379