Jatropha Genome Database

JcCA0305451.10 (JcS_100130.110)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0305451
Scaffold:
JcS_100130 JcCA0310961(+) =JcCB0085061(-) =JcCB0235721(+) =JcCA0251661(+) =JcCB0394911(+) =JcCB0174221(+) =JcCA0305451(+) =JcCB0109281(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl Q2R0I9_ORYSJ 738 53.6 68.0 (tr|Q2R0I9) Nuclear pore protein 84/107 containing protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g42420 PE=4 SV=1
Arabidopsis_pep AT3G14120.2 578 76.3 86.0 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 207 Blast hits to 206 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). | chr3:4677993-4685455 FORWARD
soybean_pep Glyma07g04680.1 878 61.2 73.4  
Medicago_pep IMGA|Medtr8g025590.1 488 75.5 86.8 Nuclear pore protein 84/107 chr08_pseudomolecule_IMGAG_V3 5237274-5234210 E EGN_Mt090430 20090702
grape_pep GSVIVT01016717001 636 82.3 92.3  
castor_bean_cds 29727.m000490 1471 89.9 89.9 conserved hypothetical protein
castor_bean_pep 29727.m000490 676 89.4 95.1 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c09734 731 99.5 99.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0305451.10 length: 661 aa.
IPR007252 Nuclear pore protein 84/107
method AccNumber shortName E-value location
Cellular Component GO:0005643 nuclear pore    
Biological Process GO:0006810 transport    
HMMPanther PTHR13003 NUP107-RELATED 4.7e-99 1-651
HMMPfam PF04121 Nup84_Nup100 3.5e-25 15-200
no_ID  
Seg seg seg NA 525-537