Jatropha Genome Database

JcCA0304431.20 (JcS_101275.50)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0304431
Scaffold:
JcS_101275 JcCB0502211(+) =JcCA0143661(+) =JcCA0141501(+) =JcCA0144211(+) =JcCA0304431(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5BU14_VITVI 669 47.6 67.2 (tr|A5BU14) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018984 PE=4 SV=1
Arabidopsis_pep ATMG00860.1 100 36.3 60.7 | Symbols: ORF158 | hypothetical protein | chrM:235916-236392 FORWARD
soybean_pep Glyma02g36320.1 640 41.6 59.1  
Medicago_pep IMGA|Medtr4g041210.1 357 34.9 54.4 RNA-directed DNA polymerase (Reverse transcriptase); Peptidase aspartic, active site; Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3 9673679-9667953 H EGN_Mt090430 20090702
grape_pep GSVIVT01018780001 218 39.9 60.4  
castor_bean_cds --No_Hits--        
castor_bean_pep 30154.m001141 68.6 46.3 59.8 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0304431.20 length: 1325 aa.
IPR000477 RNA-directed DNA polymerase (reverse transcriptase)
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003964 RNA-directed DNA polymerase activity    
Biological Process GO:0006278 RNA-dependent DNA replication    
HMMPfam PF00078 RVT_1 1.1e-19 566-727
ProfileScan PS50878 RT_POL 10.290 545-727
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50158 ZF_CCHC 9.340 240-255
no_ID  
Gene3D G3DSA:3.30.70.270 no description 5.7e-15 577-727
HMMPanther PTHR10178 GAG/POL/ENV 4.4e-189 496-1323
HMMPanther PTHR10178:SF14 RETROVIRUS 4.4e-189 496-1323
Seg seg seg NA 171-176
268-283
superfamily SSF56672 DNA/RNA 1.3e-121 510-928