Jatropha Genome Database

JcCA0302101.20 (JcS_100067.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0302101
Scaffold:
JcS_100067 JcPR01DT02K(-) =JcPR04GX9UH(+) =JcPR14IO7F0(-) =JcCB0765881(+) =JcCB0588581(-) =JcCA0302101(-) =JcCA0309151(+) =JcCA0293381(-) =JcCB0390961(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SIG8_RICCO 461 88.7 95.4 (tr|B9SIG8) Ubiquitin carboxyl-terminal hydrolase OS=Ricinus communis GN=RCOM_1256040 PE=3 SV=1
Arabidopsis_pep AT3G20630.1 424 80.3 92.1 | Symbols: UBP14, TTN6, ATUBP14 | UBP14 (UBIQUITIN-SPECIFIC PROTEASE 14); ubiquitin-specific protease | chr3:7203001-7208340 REVERSE
soybean_pep Glyma12g22240.1 435 82.4 93.7  
Medicago_pep IMGA|Medtr2g095550.1 412 75.9 89.8 Zinc finger, UBP-type chr02_pseudomolecule_IMGAG_V3 21850249-21848354 E EGN_Mt090430 20090702
grape_pep GSVIVT01014465001 437 84.1 92.9  
castor_bean_cds 30027.m000845 700 87.0 87.0 Ubiquitin carboxyl-terminal hydrolase, putative
castor_bean_pep 30027.m000845 461 88.7 95.4 Ubiquitin carboxyl-terminal hydrolase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c07816 787 98.8 98.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0302101.20 length: 246 aa.
IPR001607 Zinc finger, UBP-type
method AccNumber shortName E-value location
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF02148 zf-UBP 1.2e-13 180-233
HMMSmart SM00290 no description 1.9e-21 179-234
ProfileScan PS50271 ZF_UBP 14.154 178-246
no_ID  
HMMPanther PTHR10420 UBIQUITIN 1e-80 15-232
HMMPanther PTHR10420:SF36 UBIQUITIN 1e-80 15-232