Jatropha Genome Database

JcCA0302081.10 (JcS_101180.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0302081
Scaffold:
JcS_101180 JcCB0341361(+) =JcCB0191441(+) =JcCA0302081(-) =JcCB0691701(-) =JcCA0073191(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R9P7_RICCO 111 98.1 100.0 (tr|B9R9P7) 40S ribosomal protein S20, putative OS=Ricinus communis GN=RCOM_1499710 PE=4 SV=1
Arabidopsis_pep AT5G62300.2 110 96.3 100.0 | Symbols: | 40S ribosomal protein S20 (RPS20C) | chr5:25021388-25022235 REVERSE
soybean_pep Glyma14g04840.1 110 94.4 100.0  
Medicago_pep IMGA|Medtr2g100760.1 108 92.6 100.0 Ribosomal protein S10, eukaryotic and archaeal form chr02_pseudomolecule_IMGAG_V3 23553996-23550892 E EGN_Mt090430 20090702
grape_pep GSVIVT01018553001 110 98.1 100.0  
castor_bean_cds 30147.m014191 196 90.6 90.6 40S ribosomal protein S20, putative
castor_bean_pep 30147.m014191 111 98.1 100.0 40S ribosomal protein S20, putative
JAT_13201ests gi|262091005|gb|GT229363.1|GT229363 325 100.0 100.0 JC928 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL22SE.E05.scf 5', mRNA sequence
KJC_r1 KJC_c05308 325 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0302081.10 length: 54 aa.
IPR001848 Ribosomal protein S10
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
Gene3D G3DSA:3.30.70.600 no description 3.5e-10 1-49
HMMPanther PTHR11700 30S 6.4e-35 1-54
HMMPfam PF00338 Ribosomal_S10 7.3e-14 1-51
superfamily SSF54999 Ribosomal 7.1e-12 1-51
no_ID  
HMMPanther PTHR11700:SF3 40S 6.4e-35 1-54