Jatropha Genome Database

JcCA0301531.10 (JcS_101371.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0301531
Scaffold:
JcS_101371 JcCB0764201(+) =JcCB0087171(-) =JcCA0301531(+) =JcCB0242111(+) =JcCB0335421(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RA75_RICCO 600 79.6 87.3 (tr|B9RA75) Auxin response factor, putative OS=Ricinus communis GN=RCOM_1503930 PE=4 SV=1
Arabidopsis_pep AT5G62000.3 326 49.7 63.6 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE FACTOR 2); protein binding / transcription factor | chr5:24910859-24914680 FORWARD
soybean_pep Glyma05g38540.2 365 54.2 71.1  
Medicago_pep IMGA|Medtr4g152210.1 343 50.7 64.5 AUX/IAA protein; Transcriptional factor B3; Auxin response factor chr04_pseudomolecule_IMGAG_V3 37661517-37656640 E EGN_Mt090430 20090702
grape_pep GSVIVT01008639001 475 64.9 75.3  
castor_bean_cds 30147.m014418 579 81.9 81.9 Auxin response factor, putative
castor_bean_pep 30147.m014418 600 79.6 87.3 Auxin response factor, putative
JAT_13201ests gi|268526138|gb|FM891394.1|FM891394 912 99.2 99.2 FM891394 Jatropha curcas embryo 56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_001671, mRNA sequence
KJC_r1 KJC_c01287 2260 99.8 99.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0301531.10 length: 385 aa.
IPR011525 Aux/IAA-ARF-dimerisation
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 28.812 260-342
no_ID  
HMMPfam PF02309 AUX_IAA 2.5e-29 232-349
Seg seg seg NA 1-8
superfamily SSF54277 CAD 4e-06 255-362