Jatropha Genome Database

JcCA0299731.10 (JcS_100730.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0299731
Scaffold:
JcS_100730 JcCB0987321(-) =JcCA0300681(-) =JcCA0299731(-) =JcCA0257701(-) =JcCB0011271(-) =JcCB0364031(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RLR8_RICCO 305 68.9 76.8 (tr|B9RLR8) Leucine-rich repeat containing protein, putative OS=Ricinus communis GN=RCOM_1470450 PE=4 SV=1
Arabidopsis_pep AT5G07910.1 267 59.9 72.2 | Symbols: | leucine-rich repeat family protein | chr5:2521937-2523769 REVERSE
soybean_pep Glyma06g21790.1 305 68.0 77.2  
Medicago_pep IMGA|Medtr5g024730.1 92.4 38.9 57.6 Leucine-rich repeat, typical subtype chr05_pseudomolecule_IMGAG_V3 9846006-9843143 E EGN_Mt090430 20090702
grape_pep GSVIVT01007912001 300 70.0 75.8  
castor_bean_cds 30138.m004005 642 87.5 87.5 leucine-rich repeat containing protein, putative
castor_bean_pep 30138.m004005 305 68.9 76.8 leucine-rich repeat containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0299731.10 length: 228 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.069 13-33
58-79
81-102
104-125
150-171
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 no description 0.035 11-33
56-78
79-101
102-125
148-171
no_ID  
Gene3D G3DSA:3.80.10.10 no description 1e-34 8-185
HMMPanther PTHR23155 LEUCINE-RICH 2.3e-51 1-187
HMMPanther PTHR23155:SF37 LEUCINE-RICH 2.3e-51 1-187
HMMSmart SM00364 no description 3.1e+02 56-75
79-98
102-121
127-144
148-167
Seg seg seg NA 101-118
147-162
189-200
superfamily SSF52058 L 2.4e-38 2-186