Jatropha Genome Database

JcCA0296871.10 (JcS_100262.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0296871
Scaffold:
JcS_100262 JcPR04HOIK0(+) =JcCB0100471(-) =JcCB0357161(-) =JcCA0296871(-) =JcCB0152061(+) =JcCB0013651(+) =JcCB0242781(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RXF1_RICCO 275 70.6 73.8 (tr|B9RXF1) Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_0903280 PE=3 SV=1
Arabidopsis_pep AT1G62360.1 157 76.8 79.8 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT MERISTEMLESS); transcription factor | chr1:23058796-23061722 REVERSE
soybean_pep Glyma07g39350.1 175 47.7 60.0  
Medicago_pep IMGA|Medtr5g093180.1 126 57.5 68.9 ELK; KNOX1; KNOX2; Homeodomain-related chr05_pseudomolecule_IMGAG_V3 36623468-36619750 F EGN_Mt090430 20090702
grape_pep GSVIVT01004811001 169 80.0 82.0  
castor_bean_cds 29842.m003531 365 88.1 88.1 homeobox protein knotted-1, putative
castor_bean_pep 29842.m003531 275 70.6 73.8 homeobox protein knotted-1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0296871.10 length: 255 aa.
IPR005540 KNOX1
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03790 KNOX1 7.7e-23 109-150
IPR005541 KNOX2
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF03791 KNOX2 3.3e-24 158-207
no_ID  
HMMPanther PTHR11850 HOMEOBOX 9.8e-25 110-191
HMMPanther PTHR11850:SF5 KNOTTED 9.8e-25 110-191
Seg seg seg NA 33-46
55-62
84-95
141-152