Jatropha Genome Database

JcCA0296141.20 (JcS_200473.20)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0296141
Scaffold:
JcS_200473 JcCA0296141(+) =JcCA0029581(+) =JcCA0029721(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q6L3Y5_SOLDE 201 45.2 67.4 (tr|Q6L3Y5) Gag-pol polyprotein, putative OS=Solanum demissum GN=SDM1_46t00012 PE=4 SV=2
Arabidopsis_pep AT3G21000.1 55.1 24.7 47.7 | Symbols: | unknown protein | chr3:7363921-7365138 FORWARD
soybean_pep Glyma15g17820.1 170 39.5 57.5  
Medicago_pep IMGA|Medtr3g058900.1 65.1 27.1 49.4 Zinc finger, CCHC-type chr03_pseudomolecule_IMGAG_V3 13082612-13083121 H EGN_Mt090430 20090702
grape_pep GSVIVT01037631001 187 44.9 65.0  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0296141.20 length: 546 aa.
IPR001878 Zinc finger, CCHC-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00098 zf-CCHC 1.6e-05 248-263
HMMSmart SM00343 no description 0.0017 227-243
248-264
ProfileScan PS50158 ZF_CCHC 9.603 249-263
IPR013084 Zinc finger, CCHC retroviral-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Gene3D G3DSA:4.10.60.10 no description 0.00024 214-268
no_ID  
Seg seg seg NA 55-68
393-404
superfamily SSF57756 Retrovirus 5.9e-08 214-268