Jatropha Genome Database

JcCA0293441.20 (JcS_100015.30)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0293441
Scaffold:
JcS_100015 JcCB0254931(+) =JcCA0293441(+) =JcCB0308731(-) =JcCA0309051(+) =JcCB0987371(-) =JcCB0356581(-) =JcCB0647611(-) =JcCA0314681(+) =JcCB0063711(+) =JcCB0588921(+) =JcCB0256761(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TBZ5_VITVI 476 66.4 76.1 (tr|D7TBZ5) Whole genome shotgun sequence of line PN40024, scaffold_16.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00015515001 PE=4 SV=1
Arabidopsis_pep AT3G58570.1 454 79.4 88.2 | Symbols: | DEAD box RNA helicase, putative | chr3:21657099-21660352 FORWARD
soybean_pep Glyma11g36440.1 464 68.7 78.8  
Medicago_pep IMGA|Medtr3g105540.1 446 77.9 88.6 ATP-requiring DNA helicase RecQ; ; chr03_pseudomolecule_IMGAG_V3 26430719-26424901 E EGN_Mt090430 20090702
grape_pep GSVIVT01015515001 476 66.4 76.1  
castor_bean_cds 28320.m001110 535 87.9 87.9 dead box ATP-dependent RNA helicase, putative
castor_bean_pep 29835.m000634 447 78.3 89.0 dead box ATP-dependent RNA helicase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c01506 81.8 78.5 78.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0293441.20 length: 369 aa.
IPR001650 DNA/RNA helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 4.7e-26 158-233
HMMSmart SM00490 no description 3.2e-34 152-233
ProfileScan PS51194 HELICASE_CTER 22.743 118-272
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.7e-21 2-82
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
ProfileScan PS51192 HELICASE_ATP_BIND_1 18.526 1-94
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.7e-45 1-96
101-279
HMMPanther PTHR10967 DEAD 6.1e-186 2-349
HMMPanther PTHR10967:SF56 DEAD-BOX 6.1e-186 2-349
Seg seg seg NA 275-289
superfamily SSF52540 P-loop 5.8e-23 102-312
2-97