Jatropha Genome Database

JcCA0293381.10 (JcS_100067.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0293381
Scaffold:
JcS_100067 JcPR01DT02K(-) =JcPR04GX9UH(+) =JcPR14IO7F0(-) =JcCB0765881(+) =JcCB0588581(-) =JcCA0302101(-) =JcCA0309151(+) =JcCA0293381(-) =JcCB0390961(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A5C808_VITVI 171 83.7 91.9 (tr|A5C808) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041503 PE=4 SV=1
Arabidopsis_pep AT4G21440.1 169 83.7 91.9 | Symbols: ATMYB102, ATM4 | ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor | chr4:11418425-11419652 REVERSE
soybean_pep Glyma13g32090.1 169 82.6 91.9  
Medicago_pep IMGA|Medtr4g124700.1 159 78.2 88.5 N-6 Adenine-specific DNA methylase; Homeodomain-like; chr04_pseudomolecule_IMGAG_V3 29249973-29248640 H EGN_Mt090430 20090702
grape_pep GSVIVT01014454001 173 83.7 91.9  
castor_bean_cds 30027.m000837 168 84.6 84.6 r2r3-myb transcription factor, putative
castor_bean_pep 29933.m001439 169 82.6 90.7 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0293381.10 length: 87 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 1.7e-15 13-63
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 2.7e-23 14-83
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 2.2e-16 12-64
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 3.4e-17 14-61
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 2.5e-64 4-86
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 7.469 9-65
66-87
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 2.5e-64 4-86