Jatropha Genome Database

JcCA0289561.10 (JcS_101558.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0289561
Scaffold:
JcS_101558 JcCA0142811(+) =JcCA0289561(-) =JcCB0599631(-) =JcCB0983031(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SIV0_RICCO 474 76.8 83.6 (tr|B9SIV0) Protein pim1, putative OS=Ricinus communis GN=RCOM_0790230 PE=4 SV=1
Arabidopsis_pep AT3G02300.1 388 65.9 79.1 | Symbols: | regulator of chromosome condensation (RCC1) family protein | chr3:461551-463929 FORWARD
soybean_pep Glyma18g50920.1 427 66.7 77.3  
Medicago_pep IMGA|Medtr7g014860.1 239 81.4 90.3 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II chr07_pseudomolecule_IMGAG_V3 3624127-3622893 E EGN_Mt090430 20090702
grape_pep GSVIVT01036548001 405 66.3 77.1  
castor_bean_cds 29790.m000816 638 89.2 89.2 Protein pim1, putative
castor_bean_pep 29790.m000816 474 76.8 83.6 Protein pim1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0289561.10 length: 349 aa.
IPR000408 Regulator of chromosome condensation, RCC1
method AccNumber shortName E-value location
FPrintScan PR00633 RCCNDNSATION 3.8e-08 151-169
212-233
HMMPfam PF00415 RCC1 5.9e-10 2-42
161-213
216-274
PatternScan PS00626 RCC1_2 NA 148-158
ProfileScan PS50012 RCC1_3 13.760 1-45
162-216
217-278
IPR009091 Regulator of chromosome condensation/beta-lactamase-inhibitor protein II
Gene3D G3DSA:2.130.10.30 no description 4.3e-51 2-306
superfamily SSF50985 RCC1/BLIP-II 1.4e-50 2-310
no_ID  
HMMPanther PTHR22870 REGULATOR 2.2e-90 1-307
HMMPanther PTHR22870:SF22 REGULATOR 2.2e-90 1-307