Jatropha Genome Database

JcCA0285981.30 (JcS_100886.80)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0285981
Scaffold:
JcS_100886 JcCA0265561(-) =JcCA0296711(-) =JcCA0151401(+) =JcCA0285981(+) =JcCB0060901(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SFA8_RICCO 343 81.1 87.1 (tr|B9SFA8) Anaphase-promoting complex subunit, putative OS=Ricinus communis GN=RCOM_1095800 PE=4 SV=1
Arabidopsis_pep AT4G21530.1 308 72.9 81.9 | Symbols: | nucleotide binding | chr4:11450743-11455862 FORWARD
soybean_pep Glyma04g06540.1 49.3 30.2 46.2  
Medicago_pep IMGA|Medtr4g125250.1 306 69.9 81.1 nucleotide binding, putative chr04_pseudomolecule_IMGAG_V3 29500029-29511825 E EGN_Mt090430 20090702
grape_pep GSVIVT01003206001 323 77.9 84.4  
castor_bean_cds 29933.m001418 486 85.6 85.6 Anaphase-promoting complex subunit, putative
castor_bean_pep 29933.m001418 343 81.1 87.1 Anaphase-promoting complex subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0285981.30 length: 218 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
HMMSmart SM00320 no description 97 51-89
92-137
IPR011046 WD40 repeat-like-containing domain
superfamily SSF50978 WD40 2.8e-18 1-188
IPR015943 WD40/YVTN repeat-like-containing domain
Gene3D G3DSA:2.130.10.10 no description 1.2e-12 5-117
IPR017986 WD40-repeat-containing domain
ProfileScan PS50294 WD_REPEATS_REGION 8.967 57-117
IPR019781 WD40 repeat, subgroup
HMMPfam PF00400 WD40 2 62-89
93-116
no_ID  
HMMPanther PTHR13260 ANAPHASE 2.6e-33 10-201
Seg seg seg NA 131-146