Jatropha Genome Database

JcCA0285981.10 (JcS_100886.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0285981
Scaffold:
JcS_100886 JcCA0265561(-) =JcCA0296711(-) =JcCA0151401(+) =JcCA0285981(+) =JcCB0060901(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A5BDL4_VITVI 301 40.8 60.5 (tr|A5BDL4) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017709 PE=4 SV=1
Arabidopsis_pep AT3G18150.1 162 30.4 49.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G02910.1). | chr3:6217929-6219500 FORWARD
soybean_pep Glyma12g11180.1 90.9 24.9 42.1  
Medicago_pep IMGA|Medtr4g110360.1 93.6 26.4 46.9 Cyclin-like F-box; FBD; chr04_pseudomolecule_IMGAG_V3 24989821-24992856 E EGN_Mt090430 20090702
grape_pep GSVIVT01003200001 255 40.4 60.4  
castor_bean_cds --No_Hits--        
castor_bean_pep 29794.m003441 205 39.5 55.9 ubiquitin-protein ligase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c02385 81.8 84.1 84.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0285981.10 length: 529 aa.
IPR006566 FBD-like
method AccNumber shortName E-value location
HMMSmart SM00579 no description 0.00017 447-526
IPR013596 FBD
HMMPfam PF08387 FBD 6.6e-09 439-490
no_ID  
Coil coil coiled-coil NA 324-345
Gene3D G3DSA:3.80.10.10 no description 8.4e-08 41-277
superfamily SSF52047 RNI-like 7.3e-10 115-290
superfamily SSF81383 F-box 1.3e-09 44-227