Jatropha Genome Database

JcCA0280911.10 (JcS_101985.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0280911
Scaffold:
JcS_101985 JcCB0131011(-) =JcCB0452891(+) =JcCB0114351(-) =JcCA0280911(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S4T0_RICCO 246 65.4 77.5 (tr|B9S4T0) DNA-directed RNA polymerase III 25 kD polypeptide, putative OS=Ricinus communis GN=RCOM_0992200 PE=4 SV=1
Arabidopsis_pep AT1G06790.2 197 50.8 68.9 | Symbols: | RNA polymerase Rpb7 N-terminal domain-containing protein | chr1:2087645-2089039 FORWARD
soybean_pep Glyma03g37670.1 180 49.5 61.8  
Medicago_pep IMGA|Medtr8g087180.2 171 47.4 63.0 RNA polymerase Rpb7, N-terminal chr08_pseudomolecule_IMGAG_V3 18066643-18071126 F EGN_Mt090430 20090702
grape_pep GSVIVT01000730001 237 61.5 75.5  
castor_bean_cds 29883.m002000 214 86.1 86.1 DNA-directed RNA polymerase III 25 kD polypeptide, putative
castor_bean_pep 29883.m002000 246 65.4 77.5 DNA-directed RNA polymerase III 25 kD polypeptide, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0280911.10 length: 203 aa.
IPR005576 RNA polymerase Rpb7, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006350 transcription    
HMMPfam PF03876 RNA_pol_Rpb7_N 1.9e-14 8-86
IPR013238 RNA polymerase III, subunit Rpc25
HMMPfam PF08292 RNA_pol_Rbc25 2.4e-20 88-179
no_ID  
Gene3D G3DSA:3.30.1490.120 no description 5.8e-17 1-89
HMMPanther PTHR12709 DNA-DIRECTED 1.1e-52 2-167
HMMPanther PTHR12709:SF2 DNA-DIRECTED 1.1e-52 2-167
Seg seg seg NA 11-22
superfamily SSF88798 N-terminal, 5.6e-19 1-87