Jatropha Genome Database

JcCA0279321.10 (JcS_100044.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0279321
Scaffold:
JcS_100044 JcCB0760911(+) =JcCB0892281(+) =JcPR03BRZWZ(+) =JcCA0279321(+) =JcCA0259681(-) =JcCB0434201(-) =JcCB0411911(+) =JcCA0128121(-) =JcCB0013521(-) =JcCB0463071(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SRN9_RICCO 206 71.4 76.4 (tr|B9SRN9) Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0479530 PE=4 SV=1
Arabidopsis_pep AT3G12680.1 150 54.5 67.1 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA binding | chr3:4025276-4028999 REVERSE
soybean_pep Glyma08g25050.1 152 56.6 69.2  
Medicago_pep IMGA|Medtr5g092550.1 96.7 51.2 68.8 Zinc finger, CCCH-type chr05_pseudomolecule_IMGAG_V3 36300128-36294888 E EGN_Mt090430 20090702
grape_pep GSVIVT01036686001 172 60.6 73.9  
castor_bean_cds 29593.m000174 161 80.1 80.1 conserved hypothetical protein
castor_bean_pep 29593.m000174 206 71.4 76.4 conserved hypothetical protein
JAT_13201ests gi|268520189|gb|FM890037.1|FM890037 773 99.7 99.7 FM890037 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003825, mRNA sequence
KJC_r1 KJC_c06610 515 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0279321.10 length: 157 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 5.8e-10 31-56
80-104
HMMSmart SM00356 no description 2.2e-05 29-56
77-104
ProfileScan PS50103 ZF_C3H1 15.094 29-57
77-105
no_ID  
superfamily SSF90229 CCCH 9.9e-06 24-63
72-105