Jatropha Genome Database

JcCA0279061.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0279061
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl Q4KP31_HEVBR 282 64.5 70.9 (tr|Q4KP31) CRT/DRE binding factor 1 OS=Hevea brasiliensis GN=CBF1 PE=2 SV=1
Arabidopsis_pep AT4G25480.1 205 57.4 64.4 | Symbols: DREB1A, CBF3, ATCBF3 | DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription activator/ transcription factor | chr4:13018353-13019003 REVERSE
soybean_pep Glyma09g27180.1 194 52.8 61.5  
Medicago_pep IMGA|Medtr1g129500.1 170 48.2 60.5 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 28943207-28944231 E EGN_Mt090430 20090702
grape_pep GSVIVT01019860001 182 48.6 58.9  
castor_bean_cds 30147.m014313 194 83.1 83.1 Dehydration-responsive element-binding protein 1A, putative
castor_bean_pep 30147.m014313 274 63.9 69.7 Dehydration-responsive element-binding protein 1A, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0279061.10 length: 225 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 3e-09 61-72
83-99
Gene3D G3DSA:3.30.730.10 no description 1.3e-22 59-120
HMMPfam PF00847 AP2 2.7e-16 59-109
HMMSmart SM00380 no description 1.6e-31 60-123
ProfileScan PS51032 AP2_ERF 22.958 60-117
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2.5e-23 59-120
no_ID  
Seg seg seg NA 96-108
137-150