Jatropha Genome Database

JcCA0278051.10 (JcS_100040.120)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0278051
Scaffold:
JcS_100040 JcCB0551471(-) =JcCB0362591(-) =JcCA0128181(+) =JcCB0392341(+) =JcCB0259591(-) =JcCB0283351(+) =JcCB0514151(+) =JcCA0153671(+) =JcCA0278051(+) =JcCB0432361(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S7R3_RICCO 107 89.6 93.8 (tr|B9S7R3) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0611160 PE=4 SV=1
Arabidopsis_pep AT5G18390.1 91.3 75.0 85.4 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:6090954-6092333 FORWARD
soybean_pep Glyma05g24560.1 91.7 77.1 89.6  
Medicago_pep --No_Hits--        
grape_pep GSVIVT01026360001 96.3 79.2 89.6  
castor_bean_cds 29680.m001750 159 86.4 86.4 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29680.m001750 107 89.6 93.8 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0278051.10 length: 135 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.18 16-38
45-62
ProfileScan PS51375 PPR 6.095 7-41
42-76
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 4.4e-07 17-62
HMMPanther PTHR10483:SF3 SNF1-LIKE 4.4e-07 17-62
Seg seg seg NA 82-124