Jatropha Genome Database

JcCA0274811.20 (JcS_100892.20)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0274811
Scaffold:
JcS_100892 JcCA0274811(+) =JcCA0300671(+) =JcCB0398461(-) =JcCA0262171(-) =JcCB0332161(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q9ZRJ0_TOBAC 350 59.5 74.6 (tr|Q9ZRJ0) Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1
Arabidopsis_pep AT4G00980.1 49.3 21.5 41.4 | Symbols: | zinc knuckle (CCHC-type) family protein | chr4:422732-424580 REVERSE
soybean_pep Glyma15g42470.1 115 27.6 49.5  
Medicago_pep IMGA|Medtr6g077130.1 86.3 28.1 45.6 Zinc finger, CCHC-type chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E EGN_Mt090430 20090702
grape_pep GSVIVT01006319001 103 32.0 55.7  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268518825|gb|FM889068.1|FM889068 73.8 84.5 84.5 FM889068 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002630, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0274811.20 length: 364 aa.
IPR001878 Zinc finger, CCHC-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50158 ZF_CCHC 9.290 221-234
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 3.4e-23 197-361