Jatropha Genome Database

JcCA0271341.20 (JcS_200456.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0271341
Scaffold:
JcS_200456 JcCA0271341(-) =JcCA0071331(+) =JcCB0037821(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A5B6K2_VITVI 300 64.7 79.8 (tr|A5B6K2) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031315 PE=4 SV=1
Arabidopsis_pep AT4G23160.1 201 44.0 65.6 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma05g10880.1 269 59.8 77.2  
Medicago_pep IMGA|Medtr5g048830.1 201 43.6 65.6 Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H EGN_Mt090430 20090702
grape_pep GSVIVT01012382001 166 58.0 72.5  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c11978 155 83.9 83.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0271341.20 length: 575 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 5.9e-13 176-226
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 7.5e-93 179-521
Seg seg seg NA 36-49
53-66
78-96
superfamily SSF56672 DNA/RNA 5.6e-14 311-533