Jatropha Genome Database

JcCA0267571.10 (JcS_103858.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0267571
Scaffold:
JcS_103858 JcPR04JFGF8(+) =JcCA0316351(-) =JcCA0267571(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HRI2_POPTR 474 90.9 94.5 (tr|B9HRI2) Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_201152 PE=3 SV=1
Arabidopsis_pep AT2G16440.1 457 85.3 93.7 | Symbols: MCM4 | DNA replication licensing factor, putative | chr2:7126536-7130665 REVERSE
soybean_pep Glyma11g12110.1 456 86.9 92.5  
Medicago_pep IMGA|Medtr4g096540.1 466 88.9 93.7 MCM; Nucleic acid-binding, OB-fold, subgroup chr04_pseudomolecule_IMGAG_V3 20349558-20344347 E EGN_Mt090430 20090702
grape_pep GSVIVT01024207001 451 87.8 92.9  
castor_bean_cds 30131.m007101 511 91.5 91.5 DNA replication licensing factor MCM4, putative
castor_bean_pep 30131.m007101 459 78.8 82.6 DNA replication licensing factor MCM4, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0267571.10 length: 272 aa.
IPR001208 DNA-dependent ATPase MCM
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
FPrintScan PR01657 MCMFAMILY 3.4e-15 163-178
223-237
HMMPfam PF00493 MCM 2.3e-62 110-252
HMMSmart SM00350 no description 2e-25 1-269
ProfileScan PS50051 MCM_2 59.380 122-252
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 8.3e-13 3-71
IPR016027 Nucleic acid-binding, OB-fold-like
superfamily SSF50249 Nucleic 2.2e-23 1-74
IPR018525 DNA-dependent ATPase MCM, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006260 DNA replication    
PatternScan PS00847 MCM_1 NA 231-239
no_ID  
Gene3D G3DSA:3.40.50.300 no description 6.4e-15 145-252
HMMPanther PTHR11630 DNA 1e-155 1-252
HMMPanther PTHR11630:SF45 DNA 1e-155 1-252
superfamily SSF52540 P-loop 1e-16 119-252