Jatropha Genome Database

JcCA0264961.10 (JcS_104722.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0264961
Scaffold:
JcS_104722 JcCB0385401(+) =JcCA0264961(-) =JcCB0118121(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7SL10_VITVI 266 53.7 68.2 (tr|D7SL10) Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025216001 PE=4 SV=1
Arabidopsis_pep AT2G25170.1 65.9 28.0 44.9 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | PKL (PICKLE); ATPase/ DNA binding / DNA helicase | chr2:10714411-10723763 FORWARD
soybean_pep Glyma03g33900.1 271 53.9 66.9  
Medicago_pep IMGA|Medtr3g138090.1 71.6 27.1 41.4 SNF2-related; Chromo; Zinc finger, FYVE/PHD-type; ; chr03_pseudomolecule_IMGAG_V3 35207579-35198713 E EGN_Mt090430 20090702
grape_pep GSVIVT01025216001 266 53.7 68.2  
castor_bean_cds --No_Hits--        
castor_bean_pep 29848.m004557 75.9 29.5 43.0 chromodomain helicase DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0264961.10 length: 240 aa.
IPR000953 Chromo domain
method AccNumber shortName E-value location
Cellular Component GO:0000785 chromatin    
Molecular Function GO:0003682 chromatin binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006333 chromatin assembly or disassembly    
HMMPfam PF00385 Chromo 4.6e-07 49-104
118-172
HMMSmart SM00298 no description 0.47 52-107
114-176
ProfileScan PS50013 CHROMO_2 9.155 53-114
116-183
IPR011011 Zinc finger, FYVE/PHD-type
Molecular Function GO:0008270 zinc ion binding    
superfamily SSF57903 FYVE/PHD 2e-07 6-41
IPR016197 Chromo domain-like
superfamily SSF54160 Chromo 5e-07 113-176
50-107
no_ID  
Gene3D G3DSA:3.30.40.10 no description 5.2e-06 6-47
HMMPanther PTHR10615 MYST-RELATED 0.00013 7-40
HMMPanther PTHR10615:SF12 DPF3 0.00013 7-40