Jatropha Genome Database

JcCA0261081.10 (JcS_107145.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0261081
Scaffold:
JcS_107145 JcCA0261081(+) =JcCB0011301(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RFS3_RICCO 324 85.6 91.1 (tr|B9RFS3) Flap endonuclease-1, putative OS=Ricinus communis GN=RCOM_1436990 PE=4 SV=1
Arabidopsis_pep AT5G26680.2 308 87.3 92.8 | Symbols: | endonuclease, putative | chr5:9311882-9315458 REVERSE
soybean_pep Glyma20g22190.1 315 86.7 96.4  
Medicago_pep IMGA|Medtr1g103250.1 293 77.2 86.4 Helix-hairpin-helix motif, class 2 chr01_pseudomolecule_IMGAG_V3 21456961-21449440 E EGN_Mt090430 20090702
grape_pep GSVIVT01031344001 319 86.5 91.6  
castor_bean_cds 30128.m008993 617 90.8 90.8 flap endonuclease-1, putative
castor_bean_pep 30128.m008993 324 85.6 91.1 flap endonuclease-1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0261081.10 length: 272 aa.
IPR006084 DNA repair protein (XPGC)/yeast Rad
method AccNumber shortName E-value location
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
FPrintScan PR00853 XPGRADSUPER 1.5e-23 66-83
87-107
144-159
HMMPanther PTHR11081 XP-G/RAD2 3.3e-83 23-186
IPR006086 XPG/RAD2 endonuclease
Molecular Function GO:0004518 nuclease activity    
Biological Process GO:0006281 DNA repair    
HMMPfam PF00867 XPG_I 3.7e-32 67-154
HMMSmart SM00484 no description 2.9e-35 67-139
IPR008918 Helix-hairpin-helix motif, class 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003824 catalytic activity    
HMMSmart SM00279 no description 8.1e-14 141-174
IPR019974 XPG conserved site
PatternScan PS00842 XPG_2 NA 70-84
IPR020045 5'-3' exonuclease, C-terminal subdomain
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003824 catalytic activity    
superfamily SSF47807 5' 7.3e-18 139-261
no_ID  
Gene3D G3DSA:1.10.150.20 no description 0.00061 139-197
Gene3D G3DSA:3.40.50.1010 no description 5.1e-33 24-135
HMMPanther PTHR11081:SF9 FLAP 3.3e-83 23-186
Seg seg seg NA 215-229
superfamily SSF88723 PIN 3.1e-39 24-157