Jatropha Genome Database

JcCA0259681.10 (JcS_100044.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0259681
Scaffold:
JcS_100044 JcCB0760911(+) =JcCB0892281(+) =JcPR03BRZWZ(+) =JcCA0279321(+) =JcCA0259681(-) =JcCB0434201(-) =JcCB0411911(+) =JcCA0128121(-) =JcCB0013521(-) =JcCB0463071(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7T0Z4_VITVI 166 90.9 97.4 (tr|D7T0Z4) Whole genome shotgun sequence of line PN40024, scaffold_85.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036686001 PE=4 SV=1
Arabidopsis_pep AT3G12680.1 137 73.7 85.5 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA binding | chr3:4025276-4028999 REVERSE
soybean_pep Glyma08g25050.1 144 87.5 93.1  
Medicago_pep IMGA|Medtr2g024920.1 53.5 64.5 83.9 Zinc finger, CCCH-type chr02_pseudomolecule_IMGAG_V3 6479212-6484900 E EGN_Mt090430 20090702
grape_pep GSVIVT01036686001 166 90.9 97.4  
castor_bean_cds 29593.m000174 321 92.6 92.6 conserved hypothetical protein
castor_bean_pep 29593.m000174 159 89.6 92.2 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06610 428 98.7 98.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0259681.10 length: 133 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 3.3e-09 39-63
HMMSmart SM00356 no description 0.00056 37-64
ProfileScan PS50103 ZF_C3H1 13.244 37-65
no_ID  
Seg seg seg NA 79-93