Jatropha Genome Database

JcCA0259301.10 (JcS_101003.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0259301
Scaffold:
JcS_101003 JcPR04HT1RH(-) =JcCA0259301(-) =JcSR479173f(-) =JcCB0590701(+) =JcCB0290761(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RNI5_RICCO 701 92.6 95.9 (tr|B9RNI5) Importin alpha, putative OS=Ricinus communis GN=RCOM_1348170 PE=4 SV=1
Arabidopsis_pep AT3G06720.2 635 83.3 91.5 | Symbols: AT-IMP, ATKAP ALPHA, AIMP ALPHA | IMPA-1 (IMPORTIN ALPHA ISOFORM 1); binding / protein transporter | chr3:2120559-2123555 FORWARD
soybean_pep Glyma10g29000.1 672 88.2 93.4  
Medicago_pep IMGA|Medtr1g100320.1 663 87.4 92.9 Importin alpha-like protein, beta-binding region chr01_pseudomolecule_IMGAG_V3 20775091-20769902 E EGN_Mt090430 20090702
grape_pep GSVIVT01031205001 668 87.9 93.4  
castor_bean_cds 30076.m004699 1275 89.3 89.3 importin alpha, putative
castor_bean_pep 30076.m004699 701 92.6 95.9 importin alpha, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00625 2091 98.7 98.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0259301.10 length: 365 aa.
IPR000225 Armadillo
method AccNumber shortName E-value location
HMMPfam PF00514 Arm 4.5e-07 14-53
56-97
110-138
141-179
183-223
226-264
268-307
HMMSmart SM00185 no description 3.2e-05 14-54
56-97
99-138
140-180
182-223
225-265
268-308
ProfileScan PS50176 ARM_REPEAT 8.837 25-67
109-151
193-236
IPR011989 Armadillo-like helical
Molecular Function GO:0005488 binding    
Gene3D G3DSA:1.25.10.10 no description 2.2e-122 1-361
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 1.3e-111 1-361
no_ID  
HMMPanther PTHR23316 IMPORTIN 2.7e-206 1-365
Seg seg seg NA 228-239