Jatropha Genome Database

JcCA0257171.30 (JcS_101416.70)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0257171
Scaffold:
JcS_101416 JcCB0886671(+) =JcCB0224601(+) =JcCB0424221(-) =JcCB0084431(-) =JcCA0257171(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5BEI8_VITVI 509 36.8 56.7 (tr|A5BEI8) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043423 PE=4 SV=1
Arabidopsis_pep AT1G21280.1 117 29.9 53.4 | Symbols: | unknown protein | chr1:7447690-7448403 REVERSE
soybean_pep Glyma20g39450.2 416 32.9 54.2  
Medicago_pep IMGA|Medtr2g104160.1 446 33.8 54.5 Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H EGN_Mt090430 20090702
grape_pep GSVIVT01017026001 213 31.8 50.1  
castor_bean_cds --No_Hits--        
castor_bean_pep 29908.m006211 155 43.3 59.4 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0257171.30 length: 1243 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 9.4e-28 579-694
ProfileScan PS50994 INTEGRASE 19.641 567-742
IPR005162 Retrotransposon gag protein
HMMPfam PF03732 Retrotrans_gag 7.9e-08 87-193
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 4.5e-38 572-742
no_ID  
Gene3D G3DSA:3.30.420.10 no description 7.1e-23 599-736
HMMPanther PTHR11439 GAG-POL-RELATED 4e-120 33-1243