Jatropha Genome Database

JcCA0254141.10 (JcS_101772.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0254141
Scaffold:
JcS_101772 JcCA0301151(+) =JcCB0429541(+) =JcCB0088661(+) =JcCA0254141(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RXK9_RICCO 644 70.1 84.3 (tr|B9RXK9) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0904570 PE=4 SV=1
Arabidopsis_pep AT1G11710.1 424 46.5 68.0 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:3948886-3950859 FORWARD
soybean_pep Glyma08g40580.1 230 30.9 54.1  
Medicago_pep IMGA|Medtr1g121960.1 238 31.8 52.8 Pentatricopeptide repeat chr01_pseudomolecule_IMGAG_V3 26692128-26696815 H EGN_Mt090430 20090702
grape_pep GSVIVT01037263001 254 33.2 54.4  
castor_bean_cds 29842.m003590 793 83.1 83.1 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29842.m003590 644 70.1 84.3 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0254141.10 length: 436 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00035 1-28
33-61
71-101
107-136
141-170
176-205
212-240
246-275
281-310
315-340
351-380
385-415
HMMTigr TIGR00756 PPR: 6.2e-05 1-32
33-70
71-105
106-140
141-175
176-210
211-245
246-280
281-314
315-349
350-384
385-419
ProfileScan PS51375 PPR 10.271 69-103
31-65
1-30
104-138
139-173
174-208
209-243
244-278
313-347
279-309
348-382
383-417
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 2.6e-124 1-427
Seg seg seg NA 295-308
superfamily SSF48452 TPR-like 2.1e-28 4-373