Jatropha Genome Database

JcCA0241941.10 (JcS_100700.50)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0241941
Scaffold:
JcS_100700 JcCB0758821(-) =JcCB0085591(+) =JcCA0154061(-) =JcCB0063521(+) =JcCA0241941(-) =JcCB0182421(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q9ZRJ0_TOBAC 273 54.2 64.9 (tr|Q9ZRJ0) Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1
Arabidopsis_pep ATMG00810.1 69.3 35.1 52.2 | Symbols: ORF240B | hypothetical protein | chrM:227709-228431 REVERSE
soybean_pep Glyma06g18690.1 189 40.5 53.6  
Medicago_pep IMGA|Medtr5g086550.1 73.6 21.9 41.7 Reverse transcriptase, RNA-dependent DNA polymerase chr05_pseudomolecule_IMGAG_V3 33218578-33217607 H EGN_Mt090430 20090702
grape_pep GSVIVT01009548001 65.5 38.1 56.0  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268518200|gb|FM888474.1|FM888474 476 86.3 86.3 FM888474 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0241941.10 length: 891 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 5.9e-20 578-675
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 1.3e-55 183-824
Seg seg seg NA 307-322
349-372