Jatropha Genome Database

JcCA0237741.10 (JcS_105303.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0237741
Scaffold:
JcS_105303 JcCB0063661(+) =JcCB0226101(-) =JcCA0237741(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RTF3_RICCO 547 88.7 95.3 (tr|B9RTF3) Protein transport protein sec23, putative OS=Ricinus communis GN=RCOM_0909060 PE=4 SV=1
Arabidopsis_pep AT5G43670.1 467 70.5 85.4 | Symbols: | transport protein, putative | chr5:17539025-17541733 REVERSE
soybean_pep Glyma18g00420.1 427 70.9 83.1  
Medicago_pep IMGA|AC235009_42.1 464 71.8 85.0 Zinc finger, Sec23/Sec24-type; Sec23/Sec24 trunk region; Sec23/Sec24 helical region; Gelsolin region; Sec23/Sec24 beta-sandwich AC235009.1 168398-171685 E EGN_Mt090430 20090702
grape_pep GSVIVT01018103001 376 84.3 92.2  
castor_bean_cds 29844.m003173 1346 87.4 87.4 protein transport protein sec23, putative
castor_bean_pep 29844.m003173 547 88.7 95.3 protein transport protein sec23, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c08716 1364 98.9 98.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0237741.10 length: 444 aa.
IPR006896 Sec23/Sec24, trunk domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006888 ER to Golgi vesicle-mediated transport    
Cellular Component GO:0030127 COPII vesicle coat    
HMMPfam PF04811 Sec23_trunk 9.8e-14 4-89
IPR006900 Sec23/Sec24, helical domain
Molecular Function GO:0005515 protein binding    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006888 ER to Golgi vesicle-mediated transport    
Cellular Component GO:0030127 COPII vesicle coat    
HMMPfam PF04815 Sec23_helical 1.2e-27 217-306
superfamily SSF81811 Helical 2e-36 216-300
IPR012990 Sec23/Sec24 beta-sandwich
HMMPfam PF08033 Sec23_BS 4.2e-24 104-204
no_ID  
HMMPanther PTHR11141 PROTEIN 1.5e-125 1-300
superfamily SSF53300 vWA-like 3.7e-21 1-94
superfamily SSF81995 beta-sandwich 1.2e-32 100-215