| JcS_100203 | JcCD0096881(+) =JcCA0015332(-) =JcCB0689591(+) =JcCB0013291(+) =JcCB0227251(-) =JcCB0400871(+) =JcCA0141551(+) =JcCA0236591(-) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | B9RZR1_RICCO | 379 | 95.1 | 98.4 | (tr|B9RZR1) Phytochrome B, putative OS=Ricinus communis GN=RCOM_1000590 PE=4 SV=1 |
| Arabidopsis_pep | AT4G16250.1 | 348 | 86.1 | 93.0 | | Symbols: PHYD | PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ red or far-red light photoreceptor/ signal transducer | chr4:9195602-9199486 REVERSE |
| soybean_pep | Glyma09g03990.1 | 363 | 90.2 | 96.2 | |
| Medicago_pep | IMGA|Medtr2g038110.1 | 357 | 87.7 | 94.1 | Bacteriophytochrome; ; ; chr02_pseudomolecule_IMGAG_V3 10630151-10619628 E EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01021381001 | 262 | 76.2 | 85.0 | |
| castor_bean_cds | 29889.m003301 | 1096 | 86.9 | 86.9 | phytochrome B, putative |
| castor_bean_pep | 29889.m003301 | 379 | 95.1 | 98.4 | phytochrome B, putative |
| JAT_13201ests | --No_Hits-- | ||||
| KJC_r1 | KJC_c10066 | 67.9 | 88.7 | 88.7 |
| JcCA0236591.10 | length: 413 aa. | |||
| IPR001294 | Phytochrome | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
| Molecular Function | GO:0008020 | G-protein coupled photoreceptor activity | ||
| FPrintScan | PR01033 | PHYTOCHROME | 3.7e-21 | 247-266 332-353 |
| IPR003018 | GAF | |||
| HMMPfam | PF01590 | GAF | 6.2e-38 | 233-410 |
| HMMSmart | SM00065 | no description | 3.9e-11 | 232-413 |
| IPR013516 | Phytochrome chromophore binding site | |||
| Biological Process | GO:0007600 | sensory perception | ||
| Molecular Function | GO:0008020 | G-protein coupled photoreceptor activity | ||
| Biological Process | GO:0018298 | protein-chromophore linkage | ||
| Biological Process | GO:0045449 | regulation of transcription | ||
| PatternScan | PS00245 | PHYTOCHROME_1 | NA | 332-341 |
| IPR016132 | Phytochrome chromophore attachment domain | |||
| Biological Process | GO:0007600 | sensory perception | ||
| Molecular Function | GO:0008020 | G-protein coupled photoreceptor activity | ||
| Biological Process | GO:0018298 | protein-chromophore linkage | ||
| Biological Process | GO:0045449 | regulation of transcription | ||
| ProfileScan | PS50046 | PHYTOCHROME_2 | 66.325 | 232-400 |
| no_ID | ||||
| HMMPanther | PTHR23283 | SENSOR | 3.2e-153 | 231-413 |
| HMMPanther | PTHR23283:SF3 | PHYTOCHROME | 3.2e-153 | 231-413 |
| Seg | seg | seg | NA | 101-116 192-207 |