Jatropha Genome Database

JcCA0198981.10 (JcS_104922.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0198981
Scaffold:
JcS_104922 JcCB0471061(+) =JcCB0003071(+) =JcCA0198981(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SVN3_RICCO 253 75.5 85.3 (tr|B9SVN3) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0794250 PE=4 SV=1
Arabidopsis_pep AT1G13040.1 196 59.0 79.5 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:4447647-4449200 FORWARD
soybean_pep Glyma08g13930.1 220 62.4 80.6  
Medicago_pep IMGA|Medtr6g089570.1 114 39.0 57.8 TonB box, N-terminal chr06_pseudomolecule_IMGAG_V3 18565291-18567915 E EGN_Mt090430 20090702
grape_pep GSVIVT01000559001 243 71.6 85.2  
castor_bean_cds 29792.m000620 408 87.0 87.0 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29792.m000620 253 75.5 85.3 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0198981.10 length: 164 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00033 8-38
44-73
79-107
113-143
HMMTigr TIGR00756 PPR: 1.3e-06 8-42
43-77
78-112
113-147
ProfileScan PS51375 PPR 10.358 6-40
76-110
41-75
111-145
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 1.7e-49 1-156
superfamily SSF48452 TPR-like 6.4e-06 5-141