Jatropha Genome Database

JcCA0192731.20 (JcS_101610.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0192731
Scaffold:
JcS_101610 JcCA0192731(+) =JcCB0041541(+) =JcCB0080851(+) =JcCA0237691(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9T203_RICCO 271 71.1 79.2 (tr|B9T203) Protein AFR, putative OS=Ricinus communis GN=RCOM_0210240 PE=4 SV=1
Arabidopsis_pep AT2G21950.1 215 53.8 65.4 | Symbols: SKIP6 | SKIP6 (SKP1 interacting partner 6); ubiquitin-protein ligase | chr2:9353526-9354644 REVERSE
soybean_pep Glyma04g39720.1 217 55.2 65.0  
Medicago_pep IMGA|Medtr3g144840.1 196 53.9 67.0 Cyclin-like F-box; chr03_pseudomolecule_IMGAG_V3 37667380-37664948 E EGN_Mt090430 20090702
grape_pep GSVIVT01022227001 179 49.7 62.3  
castor_bean_cds 28256.m000140 103 80.8 80.8 Protein AFR, putative
castor_bean_pep 28256.m000140 271 71.1 79.2 Protein AFR, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0192731.20 length: 209 aa.
IPR001810 Cyclin-like F-box
method AccNumber shortName E-value location
HMMPfam PF00646 F-box 2.5e-06 16-56
ProfileScan PS50181 FBOX 9.180 13-59
IPR006652 Kelch repeat type 1
HMMPfam PF01344 Kelch_1 9.5e-07 112-154
158-200
HMMSmart SM00612 no description 0.0048 121-167
IPR011043 Galactose oxidase/kelch, beta-propeller
superfamily SSF50965 Galactose 2.7e-33 36-200
IPR013089 Kelch related
HMMPanther PTHR23230 KELCH-RELATED 4.8e-11 116-207
IPR015915 Kelch-type beta propeller
Gene3D G3DSA:2.120.10.80 no description 5.3e-26 98-202
no_ID  
HMMPanther PTHR23230:SF184KELCH-RELATED T[116-207] 4.8e-11  
Seg seg seg NA 93-111