Jatropha Genome Database

JcCA0163731.20  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0163731
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl Q2HU08_MEDTR 277 48.6 64.2 (tr|Q2HU08) Polyprotein-like, putative OS=Medicago truncatula GN=MtrDRAFT_AC149491g18v2 PE=4 SV=1
Arabidopsis_pep AT4G23160.1 245 44.4 60.4 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma18g38660.1 288 48.6 67.4  
Medicago_pep IMGA|Medtr5g048830.1 294 50.7 66.1 Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H EGN_Mt090430 20090702
grape_pep GSVIVT01031724001 97.8 32.8 48.9  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0163731.20 length: 591 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 1.3e-32 241-373
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 4.6e-104 241-540
Seg seg seg NA 11-22
195-209
449-452
485-499
superfamily SSF56672 DNA/RNA 3.4e-11 241-564