Jatropha Genome Database

JcCA0154801.10 (JcS_100029.130)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0154801
Scaffold:
JcS_100029 JcCA0079011(+) =JcCB0224691(+) =JcCB0309421(+) =JcCB0216031(+) =JcCB0293431(+) =JcCB0364041(-) =JcCB0094891(+) =JcCB0201931(-) =JcCA0154801(-) =JcCB0542031(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RGH4_RICCO 194 73.3 73.3 (tr|B9RGH4) DNA binding protein, putative OS=Ricinus communis GN=RCOM_1454070 PE=4 SV=1
Arabidopsis_pep AT5G08520.1 159 63.0 63.8 | Symbols: | myb family transcription factor | chr5:2755470-2757741 REVERSE
soybean_pep Glyma07g28310.1 179 70.4 70.4  
Medicago_pep IMGA|Medtr8g073480.1 122 51.0 55.9 Myb-like DNA-binding region, SHAQKYF class; Homeodomain-like; chr08_pseudomolecule_IMGAG_V3 14339736-14342896 H EGN_Mt090430 20090702
grape_pep GSVIVT01008241001 147 52.7 60.1  
castor_bean_cds 30131.m007263 573 88.8 88.8 DNA binding protein, putative
castor_bean_pep 30131.m007263 194 73.3 73.3 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06753 650 98.9 98.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0154801.10 length: 198 aa.
IPR006447 Myb-like DNA-binding domain, SHAQKYF class
method AccNumber shortName E-value location
HMMTigr TIGR01557 myb_SHAQKYF: 1.5e-12 16-67
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 6.6e-10 19-71
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 6.9e-06 27-63
no_ID  
Seg seg seg NA 103-115
121-142
162-193