Jatropha Genome Database

JcCA0154771.10 (JcS_101792.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0154771
Scaffold:
JcS_101792 JcCA0310221(-) =JcCA0309861(+) =JcCB0372261(+) =JcCA0154771(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9REX4_RICCO 118 56.6 71.7 (tr|B9REX4) Protein FRIGIDA, putative OS=Ricinus communis GN=RCOM_1429590 PE=4 SV=1
Arabidopsis_pep AT5G27230.1 70.9 49.3 77.6 | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 7968 Blast hits to 5791 proteins in 512 species: Archae - 158; Bacteria - 808; Metazoa - 2750; Fungi - 421; Plants - 1028; Viruses - 76; Other Eukaryotes - 2727 (source: NCBI BLink). | chr5:9584255-9587838 FORWARD
soybean_pep Glyma11g11690.1 53.5 35.8 56.8  
Medicago_pep IMGA|Medtr2g132680.1 52.8 24.4 47.1 Frigida-like chr02_pseudomolecule_IMGAG_V3 32158387-32161241 E EGN_Mt090430 20090702
grape_pep GSVIVT01000171001 52.4 32.0 51.5  
castor_bean_cds 30128.m008678 79.8 78.8 78.8 Protein FRIGIDA, putative
castor_bean_pep 30128.m008678 118 56.6 71.7 Protein FRIGIDA, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0154771.10 length: 338 aa.
IPR012474 Frigida-like
method AccNumber shortName E-value location
HMMPfam PF07899 Frigida 1.1e-18 184-336
no_ID  
Coil coil coiled-coil NA 54-82
157-185
Seg seg seg NA 87-102
197-210
279-290