Jatropha Genome Database

JcCA0154411.30 (JcS_101589.30)   /short
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0154411
Scaffold:
JcS_101589 JcCA0154411(+) =JcCB0365731(+) =JcCB0733091(-) =JcCB0303641(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SV86_RICCO 97.4 100.0 100.0 (tr|B9SV86) Gaba(A) receptor-associated protein, putative OS=Ricinus communis GN=RCOM_1302610 PE=3 SV=1
Arabidopsis_pep AT1G62040.1 90.9 89.6 95.8 | Symbols: ATG8C | ATG8C (autophagy 8c); microtubule binding | chr1:22933216-22934253 FORWARD
soybean_pep Glyma17g01650.1 94.7 95.8 100.0  
Medicago_pep IMGA|Medtr8g105940.1 80.5 83.3 91.7 Light chain 3 (LC3) chr08_pseudomolecule_IMGAG_V3 23520062-23522856 E EGN_Mt090430 20090702
grape_pep GSVIVT01037666001 93.6 93.8 100.0  
castor_bean_cds 30064.m000481 234 95.2 95.2 gaba(A) receptor-associated protein, putative
castor_bean_pep 30064.m000482 97.4 100.0 100.0 gaba(A) receptor-associated protein, putative
JAT_13201ests gi|237680382|gb|GO246594.1|GO246594 289 100.0 100.0 JcrME_RL0138 Expressed sequence tags from Jatropha curcas root cDNA library Jatropha curcas cDNA, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0154411.30 length: 48 aa.
IPR004241 Light chain 3 (LC3)
method AccNumber shortName E-value location
HMMPanther PTHR10969 MICROTUBULE-ASSOCIATED 2.4e-24 5-48
HMMPfam PF02991 MAP1_LC3 1.4e-11 14-48
no_ID  
Gene3D G3DSA:3.10.20.90 no description 6e-11 2-48
HMMPanther PTHR10969:SF4 GABA(A) 2.4e-24 5-48
superfamily SSF54236 Ubiquitin-like 5.2e-13 2-48