Jatropha Genome Database

JcCA0154411.20 (JcS_101589.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0154411
Scaffold:
JcS_101589 JcCA0154411(+) =JcCB0365731(+) =JcCB0733091(-) =JcCB0303641(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl D7T7Y9_VITVI 211 62.7 74.1 (tr|D7T7Y9) Whole genome shotgun sequence of line PN40024, scaffold_90.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037665001 PE=4 SV=1
Arabidopsis_pep AT5G54980.1 164 49.1 65.5 | Symbols: | integral membrane family protein | chr5:22315799-22316560 FORWARD
soybean_pep Glyma01g16360.1 168 55.0 72.8  
Medicago_pep IMGA|Medtr3g086570.1 109 34.5 54.2 Protein of unknown function DUF588 chr03_pseudomolecule_IMGAG_V3 20271934-20268083 E EGN_Mt090430 20090702
grape_pep GSVIVT01037665001 211 62.7 74.1  
castor_bean_cds 30064.m000480 291 82.4 82.4 conserved hypothetical protein
castor_bean_pep 30064.m000480 236 68.8 78.0 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0154411.20 length: 172 aa.
IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup
method AccNumber shortName E-value location
HMMTigr TIGR01569 A_tha_TIGR01569: 5.2e-18 10-154
IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant
HMMPfam PF04535 DUF588 5.2e-32 5-141
no_ID  
HMMPanther PTHR11615 NITRATE, 5.2e-12 30-160
HMMPanther PTHR11615:SF33 UNCHARACTERIZED 5.2e-12 30-160
Seg seg seg NA 131-148