Jatropha Genome Database

JcCA0154181.20 (JcS_100218.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0154181
Scaffold:
JcS_100218 JcCA0234331(-) =JcCB0701471(-) =JcCA0278721(-) =JcCD0171023(+) =JcCA0154181(-) =JcCA0276311(+) =JcCB0448381(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SI17_RICCO 843 79.7 85.0 (tr|B9SI17) DNA damage-binding protein, putative OS=Ricinus communis GN=RCOM_0612100 PE=4 SV=1
Arabidopsis_pep AT5G58760.1 777 78.9 90.7 | Symbols: DDB2 | DDB2 (damaged DNA-binding 2); nucleic acid binding / nucleotide binding / zinc ion binding | chr5:23730741-23733606 REVERSE
soybean_pep Glyma14g37230.1 795 82.4 94.5  
Medicago_pep IMGA|Medtr5g078770.1 779 77.5 89.2 WD40-like chr05_pseudomolecule_IMGAG_V3 29181562-29186614 E EGN_Mt090430 20090702
grape_pep GSVIVT01024745001 810 82.6 92.5  
castor_bean_cds 29681.m001338 1608 88.9 88.9 DNA damage-binding protein, putative
castor_bean_pep 29681.m001338 843 79.7 85.0 DNA damage-binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0154181.20 length: 567 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
HMMSmart SM00320 no description 1.1e+02 167-207
210-251
309-348
354-393
466-498
IPR011046 WD40 repeat-like-containing domain
superfamily SSF50978 WD40 2.9e-39 11-522
IPR015943 WD40/YVTN repeat-like-containing domain
Gene3D G3DSA:2.130.10.10 no description 4.5e-29 115-393
IPR017986 WD40-repeat-containing domain
ProfileScan PS50294 WD_REPEATS_REGION 16.375 174-402
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 335-349
380-394
IPR019781 WD40 repeat, subgroup
HMMPfam PF00400 WD40 0.00041 170-207
330-348
363-393
IPR019782 WD40 repeat 2
ProfileScan PS50082 WD_REPEATS_2 9.673 174-216
363-393
no_ID  
HMMPanther PTHR15169 DAMAGE-SPECIFIC 1.6e-115 66-520
Seg seg seg NA 16-67
522-557