Jatropha Genome Database

JcCA0154091.20 (JcS_100026.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0154091
Scaffold:
JcS_100026 JcCA0282791(+) =JcCB0431061(-) =JcCB0091031(-) =JcCA0154091(-) =JcCA0271431(+) =JcCA0131921(+) =JcCB0393011(+) =JcCB0108421(+) =JcPR03C347T(+) =JcCB0371181(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S4E7_RICCO 245 64.9 73.7 (tr|B9S4E7) RING-H2 finger protein ATL3C, putative OS=Ricinus communis GN=RCOM_0689750 PE=4 SV=1
Arabidopsis_pep AT3G10910.1 154 49.7 62.1 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:3413068-3413613 REVERSE
soybean_pep Glyma06g14830.1 205 63.2 71.3  
Medicago_pep IMGA|Medtr7g080330.1 166 52.9 62.4 Zinc finger, RING-type chr07_pseudomolecule_IMGAG_V3 16946224-16946982 E EGN_Mt090430 20090702
grape_pep GSVIVT01032684001 208 59.5 65.8  
castor_bean_cds 29729.m002364 224 81.6 81.6 RING-H2 finger protein ATL3C, putative
castor_bean_pep 29729.m002364 245 64.9 73.7 RING-H2 finger protein ATL3C, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06709 672 97.8 97.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0154091.20 length: 205 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 no description 2.1e-07 121-162
ProfileScan PS50089 ZF_RING_2 12.238 121-163
IPR018957 Zinc finger, C3HC4 RING-type
HMMPfam PF00097 zf-C3HC4 1.5e-06 121-162
no_ID  
Gene3D G3DSA:3.30.40.10 no description 1.7e-14 118-168
HMMPanther PTHR22764 RING 1.9e-20 94-178
Seg seg seg NA 48-61
82-91
superfamily SSF57850 RING/U-box 2e-16 119-166