Jatropha Genome Database

JcCA0153521.40 (JcS_107640.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0153521
Scaffold:
JcS_107640 JcCA0308071(-) =JcCA0153521(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RMP4_RICCO 236 86.2 89.2 (tr|B9RMP4) R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1082480 PE=4 SV=1
Arabidopsis_pep AT5G14340.1 216 78.0 85.8 | Symbols: AtMYB40 | AtMYB40 (myb domain protein 40); DNA binding / transcription factor | chr5:4623367-4624779 FORWARD
soybean_pep Glyma16g06900.1 224 80.8 83.8  
Medicago_pep IMGA|Medtr5g085860.1 203 72.1 80.6 Homeodomain-related; chr05_pseudomolecule_IMGAG_V3 32875577-32877860 E EGN_Mt090430 20090702
grape_pep GSVIVT01003966001 229 80.8 87.7  
castor_bean_cds 29929.m004749 383 87.8 87.8 r2r3-myb transcription factor, putative
castor_bean_pep 29929.m004749 236 86.2 89.2 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0153521.40 length: 149 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 9.8e-15 13-63
66-114
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 2.3e-12 14-84
86-146
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 1.3e-15 12-64
68-116
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 1.2e-14 14-61
67-109
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 5.3e-87 3-147
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 15.470 62-116
9-61
no_ID  
Coil coil coiled-coil NA 129-150
HMMPanther PTHR10641:SF30 R2R3-MYB 5.3e-87 3-147
Seg seg seg NA 110-121
131-142